Can you pass a command line argument to bsub?
If bsub modifies the current shell environment in any way – such as altering the value of a shell variable – that is depended upon, the |pipe may not be the best solution. It seems applying a command line argument to a bsub file is a very complicated process.
How to pass arguments in a python script?
10 tips for passing arguments to Python script When writing some Python utility scripts, you may wish to make your script as flexible as possible so that people can use it in different ways. One approach is to parameterize some of the variables originally hard coded in the script, and pass them as arguments to your script.
How to spool a command file in bsub?
Spools a job command file to the directory specified by the JOB_SPOOL_DIR parameter in lsb.params, and uses the spooled file as the command file for the job. Specifies the command and arguments used for the job submission.
Which is the first argument to be parsed in Python?
By default the first argument which is considered at sys.argv [0] is the file name. the rest of the arguments are indexed as 1,2 and so on. In the below example we see how a script uses the arguments passed onto it.
How to redirect bash script to job script?
What I need is as follows: the job script is a bash script that takes one command line argument. I need to pass the argument to that script, then redirect the script to be used as input to bsub. The problem is that the argument isn’t being applied to the script. script.bsub is my script and 1 is the numeric argument. This approach doesn’t work.
Is there a way to pipe script to bsub?
That will |pipe script.bsub ‘s stdout into bsub ‘s stdin, but it will also very likely run bsub in a subshell. If bsub modifies the current shell environment in any way – such as altering the value of a shell variable – that is depended upon, the |pipe may not be the best solution.